Publication Classification:

Cellular Measurement = Geometry

• "Celli JP, Rizvi I, Evans CL, Abu-Yousif AO, Hasan T: Quantitative imaging reveals heterogeneous growth dynamics and treatment-dependent residual tumor distributions in a three-dimensional ovarian cancer model. J Biomed Opt 2010, 15:051603."

• "Chalfoun J, Kociolek M, Dima A, Halter M, Cardone A, Peskin A, Bajcsy P, Brady M: Segmenting time-lapse phase contrast images of adjacent NIH 3T3 cells. J. Microsc. 2013, 249:41–52."

• "Chalfoun J, Majurski M, Dima A, Stuelten C, Peskin A: FogBank?: A Single Cell Segmentation across Multiple Cell Lines and Image Modalities. BMC Bioinformatics 2014, 15:431."

• "Chalfoun J, Majurski M, Peskin A, Breen C, Bajcsy P: Empirical Gradient Threshold Technique for Automated Segmentation across Image Modalities and Cell Lines. J. Microsc. 2014:1–18."

• "Cohen AR, Gomes FL a F, Roysam B, Cayouette M: Computational prediction of neural progenitor cell fates. Nat Methods 2010, 7:213–8."

• "Delgado-Gonzalo R, Chenouard N, Unser M: Spline-based deforming ellipsoids for interactive 3D bioimage segmentation. IEEE Trans Image Process 2013, 22:3926–3940."

• "Du C-J, Hawkins PT, Stephens LR, Bretschneider T: 3D time series analysis of cell shape using Laplacian approaches. BMC Bioinformatics 2013, 14:296."

• "Fusco L, Benmansour F, Fua P, Pertz O, Smith K: Automated Quantification of Morphodynamics for High-Throughput Live Cell Time-Lapse Datasets. In IEEE 10th International Symposium on Biomedical Imaging (ISBI). San Francisco, CA: IEEE; 2013:664–667."

• "Himeno-Ando A, Izumi Y, Yamaguchi A, Iimura T: Structural differences in the osteocyte network between the calvaria and long bone revealed by three-dimensional fluorescence morphometry, possibly reflecting distinct mechano-adaptations and sensitivities. Biochem Biophys Res Commun 2012, 417:765–70."

• "Juba D, Cardone A, Ip CY, Simon Jr. CG, Tison CK, Kumar G, Brady M, Varshney A: Parallel Geometric Classification of Stem Cells by Their 3D Morphology. Comput Sci Discov 2013, 6."

• "Kerschnitzki M, Kollmannsberger P, Burghammer M, Duda GN, Weinkamer R, Wagermaier W, Fratzl P: Architecture of the osteocyte network correlates with bone material quality. J Bone Miner Res 2013, 28:1837–45."

• "Kojic N, Huang A, Chung E, Tschumperlin D, So PTC: Quantification of three-dimensional dynamics of intercellular geometry under mechanical loading using a weighted directional adaptive-threshold method. Opt Express 2008, 16:12403."

• "Krausz E, de Hoogt R, Gustin E, Cornelissen F, Grand-Perret T, Janssen L, Vloemans N, Wuyts D, Frans S, Axel A, Peeters PJ, Hall B, Cik M: Translation of a Tumor Microenvironment Mimicking 3D Tumor Growth Co-culture Assay Platform to High-Content Screening. J Biomol Screen 2012."

• "Peng T, Murphy RF: Image-derived, three-dimensional generative models of cellular organization. Cytometry. A 2011, 79:383–91."

• "Srinivasa G, Fickus M, Kova?evi? J: Active Contour-Based Multiresolution Transforms for the Segmentation of Fluorescence Microscope Images. In Proc. SPIE. edited by Van De Ville D, Goyal VK, Papadakis M2007:6701."

• "Srinivasa G, Fickus MC, Guo Y, Linstedt AD, Kovacevi? J: Active mask segmentation of fluorescence microscope images. IEEE Trans. Image Process. 2009, 18:1817–29."

• "Xiong F, Ma W, Hiscock TW, Mosaliganti KR, Tentner AR, Brakke KA, Rannou N, Gelas A, Souhait L, Swinburne IA, Obholzer ND, Megason SG: Interplay of Cell Shape and Division Orientation Promotes Robust Morphogenesis of Developing Epithelia. Cell 2014, 159:415–427."

• "Yang X, Padfield D: Wavelet-initialized 3D level-set cell segmentation with local background support. In Biomedical Imaging (ISBI), 2014 IEEE 11th International Symposium on; 2014:814–817."

• "Yu W, Lee HK, Hariharan S, Bu W, Ahmed S: Evolving generalized Voronoi diagrams for accurate cellular image segmentation. Cytometry. A 2010, 77:379–86."

Survey publication disclaimer:

The National Institute of Standards and Technology (NIST) uses substantial efforts to select publications that meet the publication survey criteria. However, NIST makes no warranties that the survey is exhaustive. The survey and its contents are provided by NIST as a public service and are strictly provided "AS IS" with no warranties of any type. Furthermore, NIST does not make any statements about quality of publications by including them in the survey classification and does not imply any recommendation or endorsement.