Publication Classification:

Object Measurement = Location

Segmentation Acceleration = Single core CPU

• "Du C-J, Hawkins PT, Stephens LR, Bretschneider T: 3D time series analysis of cell shape using Laplacian approaches. BMC Bioinformatics 2013, 14:296."

• "Hodneland E, Bukoreshtliev N V, Eichler TW, Tai X-C, Gurke S, Lundervold A, Gerdes H-H: A unified framework for automated 3-d segmentation of surface-stained living cells and a comprehensive segmentation evaluation. IEEE Trans Med Imaging 2009, 28:720–38."

• "Indhumathi C, Cai YY, Guan YQ, Opas M: An automatic segmentation algorithm for 3D cell cluster splitting using volumetric confocal images. J Microsc 2011, 243:60–76."

• "Lin G, Adiga U, Olson K, Guzowski JF, Barnes C a, Roysam B: A hybrid 3D watershed algorithm incorporating gradient cues and object models for automatic segmentation of nuclei in confocal image stacks. Cytometry A 2003, 56:23–36."

• "McCullough DP, Gudla PR, Harris BS, Collins J a, Meaburn KJ, Nakaya M a, Yamaguchi TP, Misteli T, Lockett SJ: Segmentation of whole cells and cell nuclei from 3-D optical microscope images using dynamic programming. IEEE Trans Med Imaging 2008, 27:723–34."

• "Mosaliganti K, Cooper L: Reconstruction of cellular biological structures from optical microscopy data. IEEE Trans Vis Comput Graph 2008, 14:863–876."

• "Pop S, Dufour A, Garrec J Le, Ragni C V, Buckingham ME, Meilhac SM, Olivo-Marin J-C: A Fast and Automated Framework for Extraction of Nuclei From Cluttered 3D Images in Fluorescence Microscopy. In 2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro; 2011(Ptr 335):2113–2116."

• "Russell RA, Adams NM, Stephens DA, Batty E, Jensen K, Freemont PS: Segmentation of fluorescence microscopy images for quantitative analysis of cell nuclear architecture. Biophys J 2009, 96:3379–89."

• "Wählby, C.; Sintorn, I.-M.; Erlandsson, F.; Borgefors, G.; Bengtsson, E.: Combining intensity , edge and shape information for 2D and 3D segmentation of cell nuclei in tissue sections. J Microsc 2004, 215(January):67–76."

• "Zhou X, Li F, Yan J, Wong STC: A novel cell segmentation method and cell phase identification using Markov model. IEEE Trans Inf Technol Biomed 2009, 13:152–7."

Survey publication disclaimer:

The National Institute of Standards and Technology (NIST) uses substantial efforts to select publications that meet the publication survey criteria. However, NIST makes no warranties that the survey is exhaustive. The survey and its contents are provided by NIST as a public service and are strictly provided "AS IS" with no warranties of any type. Furthermore, NIST does not make any statements about quality of publications by including them in the survey classification and does not imply any recommendation or endorsement.