Publication Classification:

Imaging Modality = Phase contrast

Data Axes = X-Y-T

• "Al-Kofahi O, Radke RJ, Goderie SK, Shen Q, Temple S, Roysam B: Automated cell lineage construction: a rapid method to analyze clonal development established with murine neural progenitor cells. Cell Cycle 2006, 5:327–35."

• "Chalfoun J, Kociolek M, Dima A, Halter M, Cardone A, Peskin A, Bajcsy P, Brady M: Segmenting time-lapse phase contrast images of adjacent NIH 3T3 cells. J. Microsc. 2013, 249:41–52."

• "Chalfoun J, Majurski M, Dima A, Stuelten C, Peskin A: FogBank?: A Single Cell Segmentation across Multiple Cell Lines and Image Modalities. BMC Bioinformatics 2014, 15:431."

• "Chalfoun J, Majurski M, Peskin A, Breen C, Bajcsy P: Empirical Gradient Threshold Technique for Automated Segmentation across Image Modalities and Cell Lines. J. Microsc. 2014:1–18."

• "Cohen AR, Gomes FL a F, Roysam B, Cayouette M: Computational prediction of neural progenitor cell fates. Nat Methods 2010, 7:213–8."

• "Debeir O, Camby I, Kiss R, Van Ham P, Decaestecker C: A model-based approach for automated in vitro cell tracking and chemotaxis analyses. Cytometry A 2004, 60:29–40."

• "Hadjidemetriou S, Gabrielli B, Mele K, Vallotton P: Detection and tracking of cell divisions in phase contrast video microscopy. In Proc. of the Third MICCAI Worshop on Microscopic Image Analysis with Applications in Biology. New York, NY, USA: MICCAI; 2008."

• "Hand AJ, Sun T, Barber DC, Hose DR, MacNeil S: Automated tracking of migrating cells in phase-contrast video microscopy sequences using image registration. J Microsc 2009, 234:62–79."

• "Huh S, Eom S, Bise R, Yin Z, Kanade T: Mitosis detection for stem cell tracking in phase-contrast microscopy images. In Biomedical Imaging: From Nano to Macro, 2011 IEEE International Symposium on. IEEE; 2011:2121–2127."

• "Kachouie NN, Fieguth P, Ramunas J, Jervis E: A Statistical Thresholding Method for Cell Tracking. 2006 IEEE Int Inf Technol 2006:222–227."

• "Li K, Miller ED, Chen M, Kanade T, Weiss LE, Campbell PG: Cell population tracking and lineage construction with spatiotemporal context. Med Image Anal 2008, 12:546–66."

• "Li K, Miller ED, Weiss LE: Online tracking of migrating and proliferating cells imaged with phase-contrast microscopy. In Proceedings of the 2006 Conference on Computer Vision and Pattern Recognition Workshop. IEEE Computer Society; 2006:8."

• "Moeller M, Burger M, Dieterich P, Schwab A: A Framework for Automated Cell Tracking in Phase Contrast Microscopic Videos based on Normal Velocities. J Vis Commun Image Represent 2014, 25:396–409."

• "Sigal A, Milo R, Cohen A, Geva-Zatorsky N, Klein Y, Liron Y, Rosenfeld N, Danon T, Perzov N, Alon U: Variability and memory of protein levels in human cells. Nature 2006, 444:643–6."

• "Wang Q, Niemi J, Tan C-M, You L, West M: Image segmentation and dynamic lineage analysis in single-cell fluorescence microscopy. Cytometry A 2010, 77:101–10."

• "Winter M, Wait E, Roysam B, Goderie SK, Ali RAN, Kokovay E, Temple S, Cohen AR: Vertebrate neural stem cell segmentation, tracking and lineaging with validation and editing. Nat Protoc 2011, 6:1942–52."

• "Yin Z, Kanade T, Chen M: Understanding the phase contrast optics to restore artifact-free microscopy images for segmentation. Med Image Anal 2012, 16:1047–62."

• "Yin Z, Li K, Kanade T, Chen M: Understanding the Optics to Aid Microscopy Image Segmentation. In Medical Image Computing and Computer-Assisted Intervention--MICCAI 2010. Volume 13. Heidelberg: Springer; 2010:209–217."

Survey publication disclaimer:

The National Institute of Standards and Technology (NIST) uses substantial efforts to select publications that meet the publication survey criteria. However, NIST makes no warranties that the survey is exhaustive. The survey and its contents are provided by NIST as a public service and are strictly provided "AS IS" with no warranties of any type. Furthermore, NIST does not make any statements about quality of publications by including them in the survey classification and does not imply any recommendation or endorsement.