Publication Classification:

Segmentation Acceleration = Unknown

Imaging Modality = Confocal fluorescence

• "Bajcsy P, Lee S-C, Lin a, Folberg R: Three-dimensional volume reconstruction of extracellular matrix proteins in uveal melanoma from fluorescent confocal laser scanning microscope images. J Microsc 2006, 221(Pt 1):30–45."

• "Dzyubachyk O, Niessen W, Meijering E: Advanced Level-Set Based Multiple-Cell Segmentation and Tracking In Time-Lapse Fluorescence Microscopy Images. In Proceedings of the 5th IEEE Int. Symp. IEEE In Biomed. Imaging From Nano to Macro. IEEE Computer Society; 2008:185–188."

• "Dzyubachyk O, van Cappellen W a., Essers J, Niessen W, Meijering E: Energy minimization methods for cell motion correction and intracellular analysis in live-cell fluorescence microscopy. In 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro. Ieee; 2009:1127–1130."

• "Dzyubachyk O, Van Cappellen WA, Essers J, Niessen WJ, Meijering E: Advanced level-set-based cell tracking in time-lapse fluorescence microscopy. IEEE Trans Med Imaging 2010, 29:852–867."

• "Eck S, Rohr K, Biesdorf A, Katharina M-O, Rippe K, Stefan W: A 3D Intensity Model Based on Spherical Harmonics For Automatic 3D Segmentation of Heterochromatin Foci. In 2013 IEEE 10th International Symposium on Biomedical Imaging: From Nano to Macro. San Francisco; 2013:1484–1487."

• "Herberich G, Windoffer R, Leube R, Aach T: 3D segmentation of keratin intermediate filaments in confocal laser scanning microscopy. In Annual International Conference of the IEEE Engineering in Medicine and Biology Society. Boston, MA: IEEE EMBS; 2011:7751–4."

• "Himeno-Ando A, Izumi Y, Yamaguchi A, Iimura T: Structural differences in the osteocyte network between the calvaria and long bone revealed by three-dimensional fluorescence morphometry, possibly reflecting distinct mechano-adaptations and sensitivities. Biochem Biophys Res Commun 2012, 417:765–70."

• "Hu Y, Osuna-Highley E, Hua J, Nowicki TS, Stolz R, McKayle C, Murphy RF: Automated analysis of protein subcellular location in time series images. Bioinformatics 2010, 26:1630–6."

• "Kerschnitzki M, Kollmannsberger P, Burghammer M, Duda GN, Weinkamer R, Wagermaier W, Fratzl P: Architecture of the osteocyte network correlates with bone material quality. J Bone Miner Res 2013, 28:1837–45."

• "Lin G, Chawla MK, Olson K, Barnes CA, Guzowski JF, Bjornsson C, Shain W, Roysam B: A multi-model approach to simultaneous segmentation and classification of heterogeneous populations of cell nuclei in 3D confocal microscope images. Cytom Part A 2007, 71:724–736."

• "Oh JH, Gertych A, Tajbakhsh J: Nuclear DNA Methylation and Chromatin Condensation Phenotypes Are Distinct Between Normally Proliferating / Aging , Rapidly Growing / Immortal , and Senescent Cells ABSTRACT :. Oncotarget 2013, 4:474–493."

• "Padfield DR, Rittscher J, Sebastian T, Thomas N, Roysam B: Spatio-Temporal Cell Cycle Analysis Using 3D Level Set Segmentation of Unstained Nuclei in Line Scan Confocal Fluorescence Images. 3rd IEEE Int Symp Biomed Imaging Macro to Nano, 2006 :1036–1039."

• "Peng T, Murphy RF: Image-derived, three-dimensional generative models of cellular organization. Cytometry. A 2011, 79:383–91."

• "Singh S, Raman S, Rittscher J, Machiraju R: Segmentation Evaluation for Fluorescence Microscopy Images of Biological Objects. In MIAAB 2009 International Workshop Proceedings; 2009:1–5."

• "Srinivasa G, Fickus M, Kova?evi? J: Active Contour-Based Multiresolution Transforms for the Segmentation of Fluorescence Microscope Images. In Proc. SPIE. edited by Van De Ville D, Goyal VK, Papadakis M2007:6701."

• "Takemoto S, Yokota H: Algorithm selection based on a region similarity metric for intracellular image segmentation. In Image Segmentation. Edited by Dr Ho P-G. InTech; 2011:419–434."

• "Xiong F, Ma W, Hiscock TW, Mosaliganti KR, Tentner AR, Brakke KA, Rannou N, Gelas A, Souhait L, Swinburne IA, Obholzer ND, Megason SG: Interplay of Cell Shape and Division Orientation Promotes Robust Morphogenesis of Developing Epithelia. Cell 2014, 159:415–427."

• "Zhu Y, Olson E, Subramanian A, Feiglin D, Varshney PK, Krol A: Neuronal nuclei localization in 3D using level set and watershed segmentation from laser scanning microscopy images. In Proc. SPIE. Volume 6914. Edited by Reinhardt JM, Pluim JPW.; 2008:691441–691441–8."

Survey publication disclaimer:

The National Institute of Standards and Technology (NIST) uses substantial efforts to select publications that meet the publication survey criteria. However, NIST makes no warranties that the survey is exhaustive. The survey and its contents are provided by NIST as a public service and are strictly provided "AS IS" with no warranties of any type. Furthermore, NIST does not make any statements about quality of publications by including them in the survey classification and does not imply any recommendation or endorsement.