Publication Classification:

Segmentation Evaluation = Object-level evaluation

• "Bahnson A, Athanassiou C, Koebler D, Qian L, Shun T, Shields D, Yu H, Wang H, Goff J, Cheng T, Houck R, Cowsert L: Automated measurement of cell motility and proliferation. BMC Cell Biol 2005, 6:19."

• "Bajcsy P, Lee S-C, Lin a, Folberg R: Three-dimensional volume reconstruction of extracellular matrix proteins in uveal melanoma from fluorescent confocal laser scanning microscope images. J Microsc 2006, 221(Pt 1):30–45."

• "Bise R, Li K, Eom S: Reliably tracking partially overlapping neural stem cells in dic microscopy image sequences. In MICCAI Workshop on Optical Tissue Image analysis in Microscopy, Histopathology and Endoscopy. Imperial College London; 2009:67–77."

• "Buggenthin F, Marr C, Schwarzfischer M, Hoppe PS, Hilsenbeck O, Schroeder T, Theis FJ: An automatic method for robust and fast cell detection in bright field images from high-throughput microscopy. BMC Bioinformatics 2013, 14:297."

• "Chowdhury S, Ruusuvuori P, Liberali P: Automated cell tracking and cell lineage construction with improved performance. In Proceedings of the Sixth International Workshop on Computational Systems Biology (WCSB). Edited by Manninen T et al. Aarhus, Denmark; 2009:2–5."

• "Hand AJ, Sun T, Barber DC, Hose DR, MacNeil S: Automated tracking of migrating cells in phase-contrast video microscopy sequences using image registration. J Microsc 2009, 234:62–79."

• "Hua J, Sima C, Cypert M, Gooden GC, Shack S, Alla L, Smith E a, Trent JM, Dougherty ER, Bittner ML: Tracking transcriptional activities with high-content epifluorescent imaging. J Biomed Opt 2012, 17:046008."

• "Huh S, Eom S, Bise R, Yin Z, Kanade T: Mitosis detection for stem cell tracking in phase-contrast microscopy images. In Biomedical Imaging: From Nano to Macro, 2011 IEEE International Symposium on. IEEE; 2011:2121–2127."

• "Huth J, Buchholz M, Kraus JM, Schmucker M, von Wichert G, Krndija D, Seufferlein T, Gress TM, Kestler H a: Significantly improved precision of cell migration analysis in time-lapse video microscopy through use of a fully automated tracking system. BMC Cell Biol 2010, 11:24."

• "Indhumathi C, Cai YY, Guan YQ, Opas M: An automatic segmentation algorithm for 3D cell cluster splitting using volumetric confocal images. J Microsc 2011, 243:60–76."

• "Li K, Miller ED, Chen M, Kanade T, Weiss LE, Campbell PG: Cell population tracking and lineage construction with spatiotemporal context. Med Image Anal 2008, 12:546–66."

• "Lin G, Adiga U, Olson K, Guzowski JF, Barnes C a, Roysam B: A hybrid 3D watershed algorithm incorporating gradient cues and object models for automatic segmentation of nuclei in confocal image stacks. Cytometry A 2003, 56:23–36."

• "Lin G, Chawla MK, Olson K, Barnes CA, Guzowski JF, Bjornsson C, Shain W, Roysam B: A multi-model approach to simultaneous segmentation and classification of heterogeneous populations of cell nuclei in 3D confocal microscope images. Cytom Part A 2007, 71:724–736."

• "Lou X, Kang M, Xenopoulos P, Muñoz-Descalzo S, Hadjantonakis A-K: A Rapid and Efficient 2D/3D Nuclear Segmentation Method for Analysis of Early Mouse Embryo and Stem Cell Image Data. Stem cell reports 2014, 2:382–97."

• "Padfield D, Rittscher J, Roysam B: Spatio-temporal cell segmentation and tracking for automated screening. In Processings on the 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro; 2008:376–379."

• "Wählby, C.; Sintorn, I.-M.; Erlandsson, F.; Borgefors, G.; Bengtsson, E.: Combining intensity , edge and shape information for 2D and 3D segmentation of cell nuclei in tissue sections. J Microsc 2004, 215(January):67–76."

• "Wang M, Zhou X, Li F, Huckins J, King RW, Wong STC: Novel cell segmentation and online SVM for cell cycle phase identification in automated microscopy. Bioinformatics 2008, 24:94–101."

• "Zhu Y, Olson E, Subramanian A, Feiglin D, Varshney PK, Krol A: Neuronal nuclei localization in 3D using level set and watershed segmentation from laser scanning microscopy images. In Proc. SPIE. Volume 6914. Edited by Reinhardt JM, Pluim JPW.; 2008:691441–691441–8."

Survey publication disclaimer:

The National Institute of Standards and Technology (NIST) uses substantial efforts to select publications that meet the publication survey criteria. However, NIST makes no warranties that the survey is exhaustive. The survey and its contents are provided by NIST as a public service and are strictly provided "AS IS" with no warranties of any type. Furthermore, NIST does not make any statements about quality of publications by including them in the survey classification and does not imply any recommendation or endorsement.