Publication Classification:

Segmentation Evaluation = Pixel-level evaluation

Segmentation Acceleration = Single core CPU

• "Delgado-Gonzalo R, Chenouard N, Unser M: Spline-based deforming ellipsoids for interactive 3D bioimage segmentation. IEEE Trans Image Process 2013, 22:3926–3940."

• "Du C-J, Hawkins PT, Stephens LR, Bretschneider T: 3D time series analysis of cell shape using Laplacian approaches. BMC Bioinformatics 2013, 14:296."

• "Hodneland E, Bukoreshtliev N V, Eichler TW, Tai X-C, Gurke S, Lundervold A, Gerdes H-H: A unified framework for automated 3-d segmentation of surface-stained living cells and a comprehensive segmentation evaluation. IEEE Trans Med Imaging 2009, 28:720–38."

• "McCullough DP, Gudla PR, Harris BS, Collins J a, Meaburn KJ, Nakaya M a, Yamaguchi TP, Misteli T, Lockett SJ: Segmentation of whole cells and cell nuclei from 3-D optical microscope images using dynamic programming. IEEE Trans Med Imaging 2008, 27:723–34."

• "Mosaliganti K, Cooper L: Reconstruction of cellular biological structures from optical microscopy data. IEEE Trans Vis Comput Graph 2008, 14:863–876."

• "Russell RA, Adams NM, Stephens DA, Batty E, Jensen K, Freemont PS: Segmentation of fluorescence microscopy images for quantitative analysis of cell nuclear architecture. Biophys J 2009, 96:3379–89."

• "Srinivasa G, Fickus MC, Guo Y, Linstedt AD, Kovacevi? J: Active mask segmentation of fluorescence microscope images. IEEE Trans. Image Process. 2009, 18:1817–29."

• "Yang X, Padfield D: Wavelet-initialized 3D level-set cell segmentation with local background support. In Biomedical Imaging (ISBI), 2014 IEEE 11th International Symposium on; 2014:814–817."

• "Yin Z, Li K, Kanade T, Chen M: Understanding the Optics to Aid Microscopy Image Segmentation. In Medical Image Computing and Computer-Assisted Intervention--MICCAI 2010. Volume 13. Heidelberg: Springer; 2010:209–217."

Survey publication disclaimer:

The National Institute of Standards and Technology (NIST) uses substantial efforts to select publications that meet the publication survey criteria. However, NIST makes no warranties that the survey is exhaustive. The survey and its contents are provided by NIST as a public service and are strictly provided "AS IS" with no warranties of any type. Furthermore, NIST does not make any statements about quality of publications by including them in the survey classification and does not imply any recommendation or endorsement.