Publication Classification:

Segmentation Method = Active contours + Level Set

• "Bahnson A, Athanassiou C, Koebler D, Qian L, Shun T, Shields D, Yu H, Wang H, Goff J, Cheng T, Houck R, Cowsert L: Automated measurement of cell motility and proliferation. BMC Cell Biol 2005, 6:19."

• "Chowdhury S, Ruusuvuori P, Liberali P: Automated cell tracking and cell lineage construction with improved performance. In Proceedings of the Sixth International Workshop on Computational Systems Biology (WCSB). Edited by Manninen T et al. Aarhus, Denmark; 2009:2–5."

• "Debeir O, Camby I, Kiss R, Van Ham P, Decaestecker C: A model-based approach for automated in vitro cell tracking and chemotaxis analyses. Cytometry A 2004, 60:29–40."

• "Delgado-Gonzalo R, Chenouard N, Unser M: Spline-based deforming ellipsoids for interactive 3D bioimage segmentation. IEEE Trans Image Process 2013, 22:3926–3940."

• "Du C-J, Hawkins PT, Stephens LR, Bretschneider T: 3D time series analysis of cell shape using Laplacian approaches. BMC Bioinformatics 2013, 14:296."

• "Dzyubachyk O, Niessen W, Meijering E: Advanced Level-Set Based Multiple-Cell Segmentation and Tracking In Time-Lapse Fluorescence Microscopy Images. In Proceedings of the 5th IEEE Int. Symp. IEEE In Biomed. Imaging From Nano to Macro. IEEE Computer Society; 2008:185–188."

• "Dzyubachyk O, van Cappellen W a., Essers J, Niessen W, Meijering E: Energy minimization methods for cell motion correction and intracellular analysis in live-cell fluorescence microscopy. In 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro. Ieee; 2009:1127–1130."

• "Dzyubachyk O, Van Cappellen WA, Essers J, Niessen WJ, Meijering E: Advanced level-set-based cell tracking in time-lapse fluorescence microscopy. IEEE Trans Med Imaging 2010, 29:852–867."

• "Hodneland E, Bukoreshtliev N V, Eichler TW, Tai X-C, Gurke S, Lundervold A, Gerdes H-H: A unified framework for automated 3-d segmentation of surface-stained living cells and a comprehensive segmentation evaluation. IEEE Trans Med Imaging 2009, 28:720–38."

• "Indhumathi C, Cai YY, Guan YQ, Opas M: An automatic segmentation algorithm for 3D cell cluster splitting using volumetric confocal images. J Microsc 2011, 243:60–76."

• "Law YN, Lee HK, Yip AM: Learning Dynamical Shape Prior for Level Set based Cell Tracking. Ann. Br. Mach. Vis. Assoc. 2013, 2013:1–14."

• "Law YN: Cell tracking using phase-adaptive shape prior. J. Microsc. 2013, 252:149–58."

• "Li K, Miller ED, Chen M, Kanade T, Weiss LE, Campbell PG: Cell population tracking and lineage construction with spatiotemporal context. Med Image Anal 2008, 12:546–66."

• "Mange R, de Heras Ciechomski P, Swartz M: seeCell: Visualization and tracking dedicated to cell analysis. 2008 Int Conf Innov Inf Technol 2008:707–711."

• "McCullough DP, Gudla PR, Harris BS, Collins J a, Meaburn KJ, Nakaya M a, Yamaguchi TP, Misteli T, Lockett SJ: Segmentation of whole cells and cell nuclei from 3-D optical microscope images using dynamic programming. IEEE Trans Med Imaging 2008, 27:723–34."

• "Moeller M, Burger M, Dieterich P, Schwab A: A Framework for Automated Cell Tracking in Phase Contrast Microscopic Videos based on Normal Velocities. J Vis Commun Image Represent 2014, 25:396–409."

• "Mosaliganti K, Cooper L: Reconstruction of cellular biological structures from optical microscopy data. IEEE Trans Vis Comput Graph 2008, 14:863–876."

• "Padfield DR, Rittscher J, Sebastian T, Thomas N, Roysam B: Spatio-Temporal Cell Cycle Analysis Using 3D Level Set Segmentation of Unstained Nuclei in Line Scan Confocal Fluorescence Images. 3rd IEEE Int Symp Biomed Imaging Macro to Nano, 2006 :1036–1039."

• "Pop S, Dufour A, Garrec J Le, Ragni C V, Buckingham ME, Meilhac SM, Olivo-Marin J-C: A Fast and Automated Framework for Extraction of Nuclei From Cluttered 3D Images in Fluorescence Microscopy. In 2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro; 2011(Ptr 335):2113–2116."

• "Srinivasa G, Fickus M, Kova?evi? J: Active Contour-Based Multiresolution Transforms for the Segmentation of Fluorescence Microscope Images. In Proc. SPIE. edited by Van De Ville D, Goyal VK, Papadakis M2007:6701."

• "Srinivasa G, Fickus MC, Guo Y, Linstedt AD, Kovacevi? J: Active mask segmentation of fluorescence microscope images. IEEE Trans. Image Process. 2009, 18:1817–29."

• "Yang X, Padfield D: Wavelet-initialized 3D level-set cell segmentation with local background support. In Biomedical Imaging (ISBI), 2014 IEEE 11th International Symposium on; 2014:814–817."

• "Yu W, Lee HK, Hariharan S, Bu W, Ahmed S: Evolving generalized Voronoi diagrams for accurate cellular image segmentation. Cytometry. A 2010, 77:379–86."

• "Zhu Y, Olson E, Subramanian A, Feiglin D, Varshney PK, Krol A: Neuronal nuclei localization in 3D using level set and watershed segmentation from laser scanning microscopy images. In Proc. SPIE. Volume 6914. Edited by Reinhardt JM, Pluim JPW.; 2008:691441–691441–8."

Survey publication disclaimer:

The National Institute of Standards and Technology (NIST) uses substantial efforts to select publications that meet the publication survey criteria. However, NIST makes no warranties that the survey is exhaustive. The survey and its contents are provided by NIST as a public service and are strictly provided "AS IS" with no warranties of any type. Furthermore, NIST does not make any statements about quality of publications by including them in the survey classification and does not imply any recommendation or endorsement.