Publication Classification:

Object of Interest = Cell

Segmentation Evaluation = Visual inspection

• "Chalfoun J, Majurski M, Dima A, Stuelten C, Peskin A: FogBank?: A Single Cell Segmentation across Multiple Cell Lines and Image Modalities. BMC Bioinformatics 2014, 15:431."

• "Chalfoun J, Majurski M, Peskin A, Breen C, Bajcsy P: Empirical Gradient Threshold Technique for Automated Segmentation across Image Modalities and Cell Lines. J. Microsc. 2014:1–18."

• "Debeir O, Camby I, Kiss R, Van Ham P, Decaestecker C: A model-based approach for automated in vitro cell tracking and chemotaxis analyses. Cytometry A 2004, 60:29–40."

• "Delgado-Gonzalo R, Chenouard N, Unser M: Spline-based deforming ellipsoids for interactive 3D bioimage segmentation. IEEE Trans Image Process 2013, 22:3926–3940."

• "Du C-J, Hawkins PT, Stephens LR, Bretschneider T: 3D time series analysis of cell shape using Laplacian approaches. BMC Bioinformatics 2013, 14:296."

• "Hadjidemetriou S, Gabrielli B, Mele K, Vallotton P: Detection and tracking of cell divisions in phase contrast video microscopy. In Proc. of the Third MICCAI Worshop on Microscopic Image Analysis with Applications in Biology. New York, NY, USA: MICCAI; 2008."

• "Himeno-Ando A, Izumi Y, Yamaguchi A, Iimura T: Structural differences in the osteocyte network between the calvaria and long bone revealed by three-dimensional fluorescence morphometry, possibly reflecting distinct mechano-adaptations and sensitivities. Biochem Biophys Res Commun 2012, 417:765–70."

• "McCullough DP, Gudla PR, Harris BS, Collins J a, Meaburn KJ, Nakaya M a, Yamaguchi TP, Misteli T, Lockett SJ: Segmentation of whole cells and cell nuclei from 3-D optical microscope images using dynamic programming. IEEE Trans Med Imaging 2008, 27:723–34."

• "Srinivasa G, Fickus MC, Guo Y, Linstedt AD, Kovacevi? J: Active mask segmentation of fluorescence microscope images. IEEE Trans. Image Process. 2009, 18:1817–29."

• "Yang X, Padfield D: Wavelet-initialized 3D level-set cell segmentation with local background support. In Biomedical Imaging (ISBI), 2014 IEEE 11th International Symposium on; 2014:814–817."

Survey publication disclaimer:

The National Institute of Standards and Technology (NIST) uses substantial efforts to select publications that meet the publication survey criteria. However, NIST makes no warranties that the survey is exhaustive. The survey and its contents are provided by NIST as a public service and are strictly provided "AS IS" with no warranties of any type. Furthermore, NIST does not make any statements about quality of publications by including them in the survey classification and does not imply any recommendation or endorsement.