WIPP - Web Image Processing Pipeline

WIPP is a client-server system that provides web tools and infrastructure components for processing images from big data microscopy experiments. Access the WIPP download, deployment, and documentation website

MIST - Microscopy Image Stitching Tool for image stitching

MIST is a stitching algorithm for small and large two dimensional image grid collections. Access the MIST source code

LM - Lineage Mapper for object tracking

LM is an overlap-based cell tracking system that tracks live cells across a set of time-lapse images. Access the LM source code

FogBank - cell image segmentation

FogBank is a segmentation method designed for separating cells when they are confluent and touching each other. Access the FogBank source code