WIPP is a client-server system that provides web tools and infrastructure components for processing images from big data microscopy experiments.
Access the WIPP download, deployment, and documentation website
MIST is a stitching algorithm for small and large two dimensional image grid collections.
Access the MIST source code
LM is an overlap-based cell tracking system that tracks live cells across a set of time-lapse images.
Access the LM source code
FogBank is a segmentation method designed for separating cells when they are confluent and touching each other.
Access the FogBank source code