These are the unprocessed, raw 3D images after cropping. The files were converted from a sequence of tiff format images (obtained directly from the microscope) to a single fits format file for a simpler download. The z-stack fits format files of cell membrane channel have a file name notation ch00 while the z-stack files of scaffold channel have a file name notation ch01.
These are files of binary masks for segmented cells in fits.zip file format after cropping. Each segmentation was manually inspected using the web verification system available from the project web page.
These are files of binary masks for cell-scaffold contacts in fits format obtained by applying the planar (spun coat) and cylindrical (fibers) geometrical models to scaffolds.
These are files of binary masks of cell-scaffold contacts in fits format obtained by applying the mixed pixel statistical model to scaffolds.
For interested parties, it is possible to download multiple z-stacks
for the same scaffold type by using the wget command. For example,
the following options of the wget command can be issued when
downloading one set of raw z-stacks (cells, scaffolds) for the Spun Coat scaffold type:
wget -r -np -nH --cut-dirs=3 --no-check-certificate
A DOI has been minted for this data record: https://doi.org/doi:10.18434/M3V01R
If you use this data then, please, cite the DOI and the appropriate publication: